Index

A

ABSREL (class in analysis) Analysis (class in analysis)

analysis (module) AnalysisNames (class in extractor)

B

BUSTED (class in analysis)

E

extract_absrel_tree() (extractor.Extractor method) extract_branch_attribute() (extractor.Extractor method) extract_branch_sets() (extractor.Extractor method) extract_csv() (extractor.Extractor method) extract_evidence_ratios() (extractor.Extractor method) extract_feature_tree() (extractor.Extractor method) extract_input_file() (extractor.Extractor method) extract_input_tree() (extractor.Extractor method) extract_model_aicc() (extractor.Extractor method) extract_model_component() (extractor.Extractor method) extract_model_estimated_parameters() (extractor.Extractor method)

extract_model_frequencies() (extractor.Extractor method) extract_model_logl() (extractor.Extractor method) extract_model_rate_distributions() (extractor.Extractor method) extract_model_tree() (extractor.Extractor method) extract_number_sequences() (extractor.Extractor method) extract_number_sites() (extractor.Extractor method) extract_partition_count() (extractor.Extractor method) extract_site_logl() (extractor.Extractor method) extract_timers() (extractor.Extractor method) Extractor (class in extractor) extractor (module)

F

FEL (class in analysis)

FUBAR (class in analysis)

G

Genetics (class in extractor)

H

HyPhy (class in hyphy)

hyphy (module)

J

JSONFields (class in extractor)

L

LEISR (class in analysis)

M

map_branch_attribute() (extractor.Extractor method)

MEME (class in analysis)

R

RELAX (class in analysis) reveal_branch_attributes() (extractor.Extractor method)

reveal_fields() (extractor.Extractor method) reveal_fitted_models() (extractor.Extractor method) run_analysis() (analysis.Analysis method)

S

SLAC (class in analysis)